Package index • junco

junco Analysis Functions

The following functions are the Analysis functions used used to create common table layouts.

s_ancova_j(): Junco Extended ANCOVA Function

a_summarize_ancova_j() s_summarize_ancova_j(): ANCOVA Summary Function

column_stats(): Statistics within the column space

a_freq_combos_j(): Analysis function count and percentage in column design controlled by combosdf

s_summarize_ex_j() a_summarize_ex_j(): Tabulation for Exposure Tables

s_freq_j() a_freq_j(): Analysis/statistical function for count and percentage in core columns + (optional) relative risk columns

a_freq_subcol_j(): Analysis function count and percentage with extra column-subsetting in selected columns (controlled by subcol_* arguments)

a_proportion_ci_factor(): Formatted Analysis Function For Proportion Confidence Interval for Factor

a_proportion_ci_logical(): Formatted Analysis Function For Proportion Confidence Interval for Logical

a_summarize_aval_chg_diff_j(): Analysis function 3-column presentation

rbmi_analyse(): Analyse Multiple Imputed Datasets

analyze_values(): Shortcut Layout Function for Standard Continuous Variable Analysis

rbmi_ancova(): Analysis of Covariance

rbmi_ancova_single(): Implements an Analysis of Covariance (ANCOVA)

build_formula(): Building Model Formula

c_proportion_logical(): c_function for proportion of `TRUE` in logical vector

cmp_cfun(): Summary Analysis Function for Compliance Columns (TEFSCNCMP01 e.g.)

cmp_post_fun() cmp_split_fun(): Split Function for Compliance Columns (TEFSCNCMP01 e.g.)

jjcsformat_count_fraction(): Formatting count and fraction values

find_missing_chg_after_avisit(): Helper for Finding AVISIT after which CHG are all Missing

fit_ancova(): `ANCOVA` Analysis

fit_mmrm_j(): `MMRM` Analysis

a_coxph_hr() s_coxph_hr(): Workaround statistics function to add HR with CI

d_test_proportion_diff(): Description of the difference test between two proportions

h_tidy_pool() s_rbmi_lsmeans() a_rbmi_lsmeans(): Tabulation of RBMI Results

tidy(<tern_model>) s_lsmeans() a_lsmeans(): Tabulation of Least Square Means Results

h_colexpr_substr(): Extract Substring from Column Expression

or_glm() or_clogit() or_cmh(): Helper functions for odds ratio estimation

make_rbmi_cluster(): Create a `rbmi` ready cluster

rbmi_mmrm(): MMRM Analysis for Imputed Datasets

a_event_free() s_event_free(): Workaround statistics function to time point survival estimate with CI

a_odds_ratio_j() s_odds_ratio_j(): Odds ratio estimation

par_lapply(): Parallelise Lapply

a_proportion_diff_j() s_proportion_diff_j(): Proportion difference estimation

prop_post_fun() prop_split_fun(): Split Function for Proportion Analysis Columns (TEFCGIS08 e.g.)

prop_ratio_cmh(): Relative Risk CMH Statistic

prop_table_afun(): Formatted Analysis Function for Proportion Analysis (TEFCGIS08 e.g.)

a_relative_risk() s_relative_risk(): Relative risk estimation

resp01_a_comp_stat_factor(): Formatted Analysis Function for Comparative Statistic in Response Tables (RESP01)

resp01_a_comp_stat_logical(): Formatted Analysis Function for Comparative Statistic in Response Tables (RESP01)

resp01_acfun(): Formatted Analysis and Content Summary Function for Response Tables (RESP01)

resp01_counts_cfun(): Content Row Function for Counts of Subgroups in Response Tables (RESP01)

resp01_split_fun_fct(): Split Function Factory for the Response Tables (RESP01)

response_by_var(): Count denom fraction statistic

s_proportion_factor(): s_function for proportion of factor levels

summarize_row_counts(): Layout Creating Function Adding Row Counts

s_proportion_logical(): s_function for proportion of `TRUE` in logical vector

summarize_coxreg_multivar(): Layout Generating Function for TEFOS03 and Related Cox Regression Layouts

summarize_lsmeans_wide(): Layout Generating Function for LS Means Wide Table Layouts

s_summarize_mmrm() a_summarize_mmrm(): Dynamic tabulation of MMRM results with tables

h_a_freq_dataprep(): A Frequency Data Preparation Function

h_a_freq_prepinrows(): Frequency Preparation in Rows

h_create_altdf(): Create Alternative Data Frame

h_denom_parentdf(): Get Denominator Parent Data Frame

h_df_add_newlevels(): Add New Levels to Data Frame

h_get_label_map(): Get Label Map

h_get_trtvar_refpath(): Get Treatment Variable Reference Path

h_subset_combo(): Subset Combination

h_upd_dfrow(): Update Data Frame Row

h_update_factor(): Update Factor

rbmi_mmrm_single_info(): Extract Single Visit Information from a Fitted MMRM for Multiple Imputation Analysis

junco Formatting Functions

The following functions are the junco formatting functions used to create common table layouts.

jj_uc_map: Unicode Mapping Table

jjcsformat_xx(): Formatting of values

jjcs_num_formats(): Numeric Formatting Function

jjcsformat_count_denom_fraction(): Formatting count, denominator and fraction values

format_xx_fct(): Function factory for xx style formatting

jjcsformat_fraction_count_denom(): Formatting fraction, count and denominator values

jjcsformat_pval_fct(): Function factory for p-value formatting

jjcsformat_range_fct(): Function factory for range with censoring information formatting

insert_blank_line(): Insertion of Blank Lines in a Layout

junco Sorting Functions and Pruning Functions

The following functions are the junco sorting and pruning functions used to create common table layouts.

bspt_pruner(): Pruning Function for pruning based on a fraction and/or a difference from the control arm

count_pruner(): Count Pruner

jj_complex_scorefun(): Complex Scoring Function

keep_non_null_rows(): Pruning Function to accommodate removal of completely NULL rows within a table

remove_rows(): Pruning function to remove specific rows of a table regardless of counts

safe_prune_table(): Safely Prune Table With Empty Table Message If Needed

junco Splitting Functions

The following functions are junco column spanning functions used to create common table layouts.

cond_rm_facets(): Conditional Removal of Facets

create_colspan_map(): Creation of Column Spanning Mapping Dataframe

create_colspan_var(): Creation of Column Spanning Variables

make_combo_splitfun(): Split Function Helper

real_add_overall_facet(): Add Overall Facet

junco Functions For titles/footnotes and generating .rtfs

The following utility functions help to add titles/footnotes and generate the .rtf files.

listing_column_widths() def_colwidths(): Define Column Widths

get_titles_from_file(): Get Titles/Footers For Table From Sources

set_titles(): Set Output Titles

tt_to_tlgrtf(): TableTree to .rtf Conversion

junco Miscellaneous Functions

The following functions are other miscellaneous junco functions used to create common table layouts.

remove_col_count(): Removal of Unwanted Column Counts

rm_levels(): Removal of Levels

get_mmrm_lsmeans(): Extract Least Square Means from `MMRM`

get_ref_info(): Obtain Reference Information for a Global Reference Group

get_visit_levels(): Get Visit Levels in Order Defined by Numeric Version