Package index • junco

junco Analysis Functions

The following functions are the Analysis functions used used to create common table layouts.

s_ancova_j(): Junco Extended ANCOVA Function
a_summarize_ancova_j() s_summarize_ancova_j(): ANCOVA Summary Function
column_stats(): Statistics within the column space
a_freq_combos_j(): Analysis function count and percentage in column design controlled by combosdf
s_summarize_ex_j() a_summarize_ex_j(): Tabulation for Exposure Tables
s_freq_j() a_freq_j(): Analysis/statistical function for count and percentage in core columns and (optional) relative risk columns
a_freq_subcol_j(): Analysis function count and percentage with extra column-subsetting in selected columns (controlled by subcol_* arguments)
a_proportion_ci_factor(): Formatted Analysis Function For Proportion Confidence Interval for Factor
a_proportion_ci_logical(): Formatted Analysis Function For Proportion Confidence Interval for Logical
a_summarize_aval_chg_diff_j(): Analysis function 3-column presentation
rbmi_analyse(): Analyse Multiple Imputed Datasets
analyze_values(): Shortcut Layout Function for Standard Continuous Variable Analysis
rbmi_ancova(): Analysis of Covariance
rbmi_ancova_single(): Implements an Analysis of Covariance (ANCOVA)
build_formula(): Building Model Formula
c_proportion_logical(): c_function for proportion of TRUE in logical vector
cmp_cfun(): Summary Analysis Function for Compliance Columns (TEFSCNCMP01 e.g.)
cmp_post_fun() cmp_split_fun(): Split Function for Compliance Columns (TEFSCNCMP01 e.g.)
jjcsformat_count_fraction(): Formatting count and fraction values
find_missing_chg_after_avisit(): Helper for Finding AVISIT after which CHG are all Missing
fit_ancova(): ANCOVA Analysis
fit_mmrm_j(): MMRM Analysis
a_coxph_hr() s_coxph_hr(): Workaround statistics function to add HR with CI
d_test_proportion_diff_j() stable: Description of the difference test between two proportions
h_tidy_pool() s_rbmi_lsmeans() a_rbmi_lsmeans() stable: Tabulation of RBMI Results
tidy(<tern_model>) s_lsmeans() a_lsmeans() stable: Tabulation of Least Square Means Results
h_colexpr_substr(): Extract Substring from Column Expression
or_glm_j() or_clogit_j() or_cmh() stable: Helper functions for odds ratio estimation
make_rbmi_cluster(): Create a rbmi ready cluster
rbmi_mmrm(): MMRM Analysis for Imputed Datasets
a_event_free() s_event_free(): Workaround statistics function to time point survival estimate with CI
a_odds_ratio_j() s_odds_ratio_j() stable: Odds ratio estimation
par_lapply(): Parallelise Lapply
a_proportion_diff_j() s_proportion_diff_j(): Proportion difference estimation
prop_post_fun() prop_split_fun(): Split Function for Proportion Analysis Columns (TEFCGIS08 e.g.)
prop_ratio_cmh(): Relative Risk CMH Statistic
prop_table_afun(): Formatted Analysis Function for Proportion Analysis (TEFCGIS08 e.g.)
a_relative_risk() s_relative_risk(): Relative risk estimation
resp01_a_comp_stat_factor(): Formatted Analysis Function for Comparative Statistic in Response Tables (RESP01)
resp01_a_comp_stat_logical(): Formatted Analysis Function for Comparative Statistic in Response Tables (RESP01)
resp01_acfun(): Formatted Analysis and Content Summary Function for Response Tables (RESP01)
resp01_counts_cfun(): Content Row Function for Counts of Subgroups in Response Tables (RESP01)
resp01_split_fun_fct(): Split Function Factory for the Response Tables (RESP01)
response_by_var(): Count denom fraction statistic
s_proportion_factor(): s_function for proportion of factor levels
summarize_row_counts(): Layout Creating Function Adding Row Counts
s_proportion_logical(): s_function for proportion of TRUE in logical vector
summarize_coxreg_multivar(): Layout Generating Function for TEFOS03 and Related Cox Regression Layouts
summarize_lsmeans_wide(): Layout Generating Function for LS Means Wide Table Layouts
s_summarize_mmrm() a_summarize_mmrm() stable: Dynamic tabulation of MMRM results with tables
h_a_freq_dataprep(): A Frequency Data Preparation Function
h_a_freq_prepinrows(): Frequency Preparation in Rows
h_create_altdf(): Create Alternative Data Frame
h_denom_parentdf(): Get Denominator Parent Data Frame
h_df_add_newlevels(): Add New Levels to Data Frame
h_get_label_map(): Get Label Map
h_get_trtvar_refpath(): Get Treatment Variable Reference Path
h_subset_combo(): Subset Combination
h_upd_dfrow(): Update Data Frame Row
h_update_factor(): Update Factor
rbmi_mmrm_single_info(): Extract Single Visit Information from a Fitted MMRM for Multiple Imputation Analysis

junco Formatting Functions

The following functions are the junco formatting functions used to create common table layouts.

jj_uc_map: Unicode Mapping Table
jjcsformat_xx(): Formatting of values
jjcs_num_formats(): Numeric Formatting Function
jjcsformat_count_denom_fraction(): Formatting count, denominator and fraction values
format_xx_fct(): Function factory for xx style formatting
jjcsformat_fraction_count_denom(): Formatting fraction, count and denominator values
jjcsformat_pval_fct(): Function factory for p-value formatting
jjcsformat_range_fct(): Function factory for range with censoring information formatting
insert_blank_line(): Insertion of Blank Lines in a Layout

junco Sorting Functions and Pruning Functions

The following functions are the junco sorting and pruning functions used to create common table layouts.

bspt_pruner(): Pruning Function for pruning based on a fraction and/or a difference from the control arm
count_pruner(): Count Pruner
jj_complex_scorefun(): Complex Scoring Function
keep_non_null_rows(): Pruning Function to accommodate removal of completely NULL rows within a table
remove_rows(): Pruning function to remove specific rows of a table regardless of counts
safe_prune_table(): Safely Prune Table With Empty Table Message If Needed

junco Splitting Functions

The following functions are junco column spanning functions used to create common table layouts.

cond_rm_facets(): Conditional Removal of Facets
create_colspan_map(): Creation of Column Spanning Mapping Dataframe
create_colspan_var(): Creation of Column Spanning Variables
make_combo_splitfun(): Split Function Helper
real_add_overall_facet(): Add Overall Facet

junco Functions For titles/footnotes and generating .rtfs

The following utility functions help to add titles/footnotes and generate the .rtf files.

listing_column_widths() def_colwidths(): Define Column Widths
get_titles_from_file(): Get Titles/Footers For Table From Sources
set_titles(): Set Output Titles
tt_to_tlgrtf(): TableTree to .rtf Conversion

junco Miscellaneous Functions

The following functions are other miscellaneous junco functions used to create common table layouts.

remove_col_count(): Removal of Unwanted Column Counts
rm_levels(): Removal of Levels
get_mmrm_lsmeans(): Extract Least Square Means from MMRM
get_ref_info(): Obtain Reference Information for a Global Reference Group
get_visit_levels(): Get Visit Levels in Order Defined by Numeric Version